PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676743142
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 230aa    MW: 25812.1 Da    PI: 10.7905
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676743142genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000176991123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++C + F ++  L  H++ H
  676743142 69 FSCNYCQRKFYSSQALGGHQNAH 91
               89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.56E-76596No hitNo description
PROSITE profilePS5015711.4276996IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MDPSINGEQE MLKLRKRGHQ DLELGLTLLP RATTSSELNL IDSFRTSSSS TSHHHHNHQQ  60
DNLEDQRVFS CNYCQRKFYS SQALGGHQNA HKRERTLAKR GQFYKMGLSS SSSPSSAFAF  120
GHGSVSRFAS IASLPLHGSA SNRSTLGIQA HSTIHNPFLG RQAASLSHVF KQSVHRKPVI  180
GKVLPEKFHL EIASNKNSNI STPKLERIGY FKSKQEDRHQ FKKIDLTLKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_178188.11e-121zinc finger protein 1
RefseqXP_013590742.11e-121PREDICTED: zinc finger protein 1-like
SwissprotQ424851e-123ZFP1_ARATH; Zinc finger protein 1
TrEMBLA0A0D3D1Y41e-121A0A0D3D1Y4_BRAOL; Uncharacterized protein
TrEMBLQ0V8141e-121Q0V814_ARATH; At1g80730
STRINGAT1G80730.11e-120(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM118581628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.11e-120zinc-finger protein 1